Atlas
Sign in
Models / bio-nlp / s-pubmedbert-medquad / benchmarks

bio-nlp/s-pubmedbert-medquad

Visibility: PUBLIC
Model cardFilesBenchmarks
Group by

BC5CDR chemical NER bio-nlp/bc5cdr-chemical-ner

Drawn from: bc5cdr

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Chemical entity F1 (token probe) ↑ higher is better · probe 0.734 [0.673, 0.798] 100 15 / 16 0.889 reproduced unknown Board
Chemical entity precision (token probe) ↑ higher is better · probe 0.687 [0.600, 0.782] 100 15 / 16 0.870 reproduced unknown Board
Chemical entity recall (token probe) ↑ higher is better · probe 0.789 [0.737, 0.838] 100 12 / 16 0.914 reproduced unknown Board

Clinical entity recognition (MACCROBAT) bio-nlp/clinical-entity-recognition

Drawn from: MACCROBAT_biomedical_ner

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Entity F1, 3 types (token probe) ↑ higher is better · probe 0.390 [0.328, 0.458] 100 15 / 16 0.724 reproduced unknown Board
Entity precision, 3 types (token probe) ↑ higher is better · probe 0.340 [0.281, 0.410] 100 16 / 16 0.709 reproduced unknown Board
Entity recall, 3 types (token probe) ↑ higher is better · probe 0.457 [0.390, 0.529] 100 15 / 16 0.739 reproduced unknown Board
Entity macro F1, 3 types (token probe) ↑ higher is better · probe · secondary 0.382 [0.316, 0.453] 100 — 0.728 reproduced unknown Board

PubMedQA accuracy bio-nlp/pubmedqa-accuracy

Drawn from: PubMedQA

atlas-full-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Accuracy (logistic probe) ↑ higher is better · probe 0.518 [0.480, 0.556] 500 11 / 17 0.576 reproduced unknown Board
Macro F1 (logistic probe) ↑ higher is better · probe 0.366 [0.323, 0.408] 500 11 / 17 0.444 reproduced unknown Board

Spanish occupation entity recognition (ProfNER) bio-nlp/spanish-occupation-entity-recognition

Drawn from: ProfNER_corpus_NER

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Entity F1, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.000 [0.000, 0.000] 100 16 / 16 0.630 reproduced unknown Board
Entity precision, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.000 [0.000, 0.000] 100 16 / 16 1.000 reproduced unknown Board
Entity recall, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.000 [0.000, 0.000] 100 16 / 16 0.535 reproduced unknown Board
Entity macro F1, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe · secondary 0.000 [0.000, 0.000] 100 — 0.329 reproduced unknown Board