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Models / bio-nlp / roberta-base-biomedical-es / benchmarks

bio-nlp/roberta-base-biomedical-es

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BC5CDR chemical NER bio-nlp/bc5cdr-chemical-ner

Drawn from: bc5cdr

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Chemical entity F1 (token probe) ↑ higher is better · probe 0.849 [0.804, 0.887] 100 7 / 16 0.889 reproduced none declared Board
Chemical entity precision (token probe) ↑ higher is better · probe 0.840 [0.778, 0.896] 100 6 / 16 0.870 reproduced none declared Board
Chemical entity recall (token probe) ↑ higher is better · probe 0.857 [0.816, 0.893] 100 8 / 16 0.914 reproduced none declared Board

Clinical entity recognition (MACCROBAT) bio-nlp/clinical-entity-recognition

Drawn from: MACCROBAT_biomedical_ner

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Entity F1, 3 types (token probe) ↑ higher is better · probe 0.510 [0.436, 0.580] 100 5 / 16 0.724 reproduced none declared Board
Entity precision, 3 types (token probe) ↑ higher is better · probe 0.474 [0.405, 0.546] 100 5 / 16 0.709 reproduced none declared Board
Entity recall, 3 types (token probe) ↑ higher is better · probe 0.551 [0.466, 0.631] 100 6 / 16 0.739 reproduced none declared Board
Entity macro F1, 3 types (token probe) ↑ higher is better · probe · secondary 0.496 [0.412, 0.573] 100 — 0.728 reproduced none declared Board

PubMedQA accuracy bio-nlp/pubmedqa-accuracy

Drawn from: PubMedQA

atlas-full-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Accuracy (logistic probe) ↑ higher is better · probe 0.544 [0.506, 0.580] 500 8 / 17 0.576 reproduced none declared Board
Macro F1 (logistic probe) ↑ higher is better · probe 0.392 [0.347, 0.438] 500 9 / 17 0.444 reproduced none declared Board

Spanish occupation entity recognition (ProfNER) bio-nlp/spanish-occupation-entity-recognition

Drawn from: ProfNER_corpus_NER

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Entity F1, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.630 best [0.444, 0.790] 100 1 / 16 0.630 reproduced none declared Board
Entity precision, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.767 [0.550, 0.938] 100 3 / 16 1.000 reproduced none declared Board
Entity recall, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.535 best [0.357, 0.729] 100 1 / 16 0.535 reproduced none declared Board
Entity macro F1, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe · secondary 0.329 best [0.250, 0.762] 100 — 0.329 reproduced none declared Board