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bio-nlp/clinicalbert

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BC5CDR chemical NER bio-nlp/bc5cdr-chemical-ner

Drawn from: bc5cdr

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Chemical entity F1 (token probe) ↑ higher is better · probe 0.771 [0.715, 0.819] 100 12 / 16 0.889 reproduced unknown Board
Chemical entity precision (token probe) ↑ higher is better · probe 0.781 [0.713, 0.844] 100 13 / 16 0.870 reproduced unknown Board
Chemical entity recall (token probe) ↑ higher is better · probe 0.761 [0.701, 0.819] 100 13 / 16 0.914 reproduced unknown Board

Clinical entity recognition (MACCROBAT) bio-nlp/clinical-entity-recognition

Drawn from: MACCROBAT_biomedical_ner

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Entity F1, 3 types (token probe) ↑ higher is better · probe 0.480 [0.411, 0.549] 100 10 / 16 0.724 reproduced unknown Board
Entity precision, 3 types (token probe) ↑ higher is better · probe 0.457 [0.388, 0.528] 100 11 / 16 0.709 reproduced unknown Board
Entity recall, 3 types (token probe) ↑ higher is better · probe 0.504 [0.426, 0.578] 100 11 / 16 0.739 reproduced unknown Board
Entity macro F1, 3 types (token probe) ↑ higher is better · probe · secondary 0.484 [0.408, 0.552] 100 — 0.728 reproduced unknown Board

PubMedQA accuracy bio-nlp/pubmedqa-accuracy

Drawn from: PubMedQA

atlas-full-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Accuracy (logistic probe) ↑ higher is better · probe 0.518 [0.480, 0.554] 500 11 / 17 0.576 reproduced unknown Board
Macro F1 (logistic probe) ↑ higher is better · probe 0.361 [0.324, 0.400] 500 13 / 17 0.444 reproduced unknown Board

Spanish occupation entity recognition (ProfNER) bio-nlp/spanish-occupation-entity-recognition

Drawn from: ProfNER_corpus_NER

atlas-n100-v1

Metric Value 95% CI n Rank Best in catalogue Source Overlap Board
Entity F1, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.448 [0.245, 0.598] 100 4 / 16 0.630 reproduced unknown Board
Entity precision, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.625 [0.381, 0.846] 100 9 / 16 1.000 reproduced unknown Board
Entity recall, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe 0.349 [0.175, 0.521] 100 4 / 16 0.535 reproduced unknown Board
Entity macro F1, PROFESION + SITUACION_LABORAL (token probe) ↑ higher is better · probe · secondary 0.234 [0.143, 0.594] 100 — 0.329 reproduced unknown Board