Papers
22 papers · showing 20
A multi-modal co-attention model for accurate drug-target interaction prediction.
protein-ml · DOI 10.1371/journal.pone.0351880 · PLoS ONE · 0 citations
protein
Jun 2026
Artificial Intelligence in Selected Domains of Drug Discovery: A Critical Narrative Review.
protein-ml · DOI 10.2147/dddt.s607228 · Drug Design Development and Therapy · 0 citations
protein
Jun 2026
Research progress of artificial intelligence in high-throughput drug screening.
protein-ml · DOI 10.3389/fphar.2026.1847031 · Frontiers in Pharmacology · 1 citation
protein
Jun 2026
Protein Design Enters the Artificial Intelligence Era: Foundations, Tools, and Emerging Paradigms.
protein-ml · DOI 10.34133/csbj.0105 · Computational and Structural Biotechnology Journal · 0 citations
protein
Jun 2026
Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction
protein-ml · DOI 10.1101/2025.06.14.659707 · bioRxiv (Cold Spring Harbor Laboratory) · 601 citations
proteinstructure
Jun 2025
Simulating 500 million years of evolution with a language model.
protein-ml · DOI 10.1126/science.ads0018 · Science · 732 citations
proteingeneration
Jan 2025
Boltz-1 Democratizing Biomolecular Interaction Modeling
protein-ml · DOI 10.1101/2024.11.19.624167 · bioRxiv (Cold Spring Harbor Laboratory) · 472 citations
proteinstructure
Nov 2024
Protein language models learn evolutionary statistics of interacting sequence motifs.
protein-ml · DOI 10.1073/pnas.2406285121 · Proceedings of the National Academy of Sciences · 118 citations
proteinsequence
Oct 2024
Chai-1: Decoding the molecular interactions of life
protein-ml · DOI 10.1101/2024.10.10.615955 · bioRxiv (Cold Spring Harbor Laboratory) · 416 citations
proteinstructure
Oct 2024
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.
protein-ml · DOI 10.1093/nar/gkad1011 · Nucleic Acids Research · 2099 citations
proteinstructuredatabase
Jan 2024
PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences.
protein-ml · DOI 10.1039/d3sc04185a · Chemical Science · 380 citations
proteinbenchmarkdocking
Dec 2023
De novo design of protein structure and function with RFdiffusion.
protein-ml · DOI 10.1038/s41586-023-06415-8 · Nature · 2208 citations
proteindesign
Jul 2023
Evolutionary-scale prediction of atomic-level protein structure with a language model.
protein-ml · DOI 10.1126/science.ade2574 · Science · 5468 citations
proteinstructure
Mar 2023
Robust deep learning-based protein sequence design using ProteinMPNN.
protein-ml · DOI 10.1126/science.add2187 · Science · 2059 citations
proteindesign
Sep 2022
ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning.
protein-ml · DOI 10.1109/tpami.2021.3095381 · IEEE Transactions on Pattern Analysis and Machine Intelligence · 2456 citations
proteinsequence
Sep 2022
ProtGPT2 is a deep unsupervised language model for protein design.
protein-ml · DOI 10.1038/s41467-022-32007-7 · Nature Communications · 824 citations
proteingeneration
Jul 2022
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
protein-ml · DOI 10.1093/nar/gkab1061 · Nucleic Acids Research · 8533 citations
proteinstructuredatabase
Jan 2022
FLIP: Benchmark tasks in fitness landscape inference for proteins
protein-ml · DOI 10.1101/2021.11.09.467890 · bioRxiv (Cold Spring Harbor Laboratory) · 14 citations
proteinbenchmark
Nov 2021