Papers
80 papers · showing 20
ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning.
protein-ml · DOI 10.1109/tpami.2021.3095381 · IEEE Transactions on Pattern Analysis and Machine Intelligence · 2456 citations
proteinsequence
Sep 2022
ProtGPT2 is a deep unsupervised language model for protein design.
protein-ml · DOI 10.1038/s41467-022-32007-7 · Nature Communications · 824 citations
proteingeneration
Jul 2022
Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq.
single-cell · DOI 10.1016/j.cell.2022.05.013 · Cell · 723 citations
single-cellperturbation
Jun 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans.
single-cell · DOI 10.1126/science.abl4896 · Science · 1051 citations
single-cellatlas
May 2022
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
protein-ml · DOI 10.1093/nar/gkab1061 · Nucleic Acids Research · 8533 citations
proteinstructuredatabase
Jan 2022
FLIP: Benchmark tasks in fitness landscape inference for proteins
protein-ml · DOI 10.1101/2021.11.09.467890 · bioRxiv (Cold Spring Harbor Laboratory) · 14 citations
proteinbenchmark
Nov 2021
Highly accurate protein structure prediction with AlphaFold.
protein-ml · DOI 10.1038/s41586-021-03819-2 · Nature · 47081 citations
proteinstructure
Jul 2021
Cellpose: a generalist algorithm for cellular segmentation.
cell-imaging · DOI 10.1038/s41592-020-01018-x · Nature Methods · 4604 citations
imagingsegmentation
Dec 2020
The mutational constraint spectrum quantified from variation in 141,456 humans.
genomics · DOI 10.1038/s41586-020-2308-7 · Nature · 10379 citations
dnavariantsdatabase
May 2020
Evaluating Protein Transfer Learning with TAPE.
protein-ml · DOI 10.48550/arxiv.1906.08230 · PubMed · 79 citations
proteinbenchmark
Dec 2019
scGen predicts single-cell perturbation responses.
single-cell · DOI 10.1038/s41592-019-0494-8 · Nature Methods · 734 citations
single-cellperturbation
Jul 2019
Predicting Splicing from Primary Sequence with Deep Learning.
rna-ml · DOI 10.1016/j.cell.2018.12.015 · Cell · 3059 citations
rnasplicing
Jan 2019
Deep generative modeling for single-cell transcriptomics.
single-cell · DOI 10.1038/s41592-018-0229-2 · Nature Methods · 2804 citations
single-cellprobabilistic
Nov 2018
The Encyclopedia of DNA elements (ENCODE): data portal update.
genomics · DOI 10.1093/nar/gkx1081 · Nucleic Acids Research · 2026 citations
dnafunctional-genomicsdatabase
Jan 2018
Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12.
protein-ml · DOI 10.1002/prot.25431 · Proteins Structure Function and Bioinformatics · 187 citations
proteinbenchmark
Dec 2017
The Human Cell Atlas.
single-cell · DOI 10.7554/elife.27041 · eLife · 2427 citations
single-cellatlas
Dec 2017
A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.
single-cell · DOI 10.1016/j.cell.2017.10.049 · Cell · 3813 citations
single-cellperturbationdatabase
Nov 2017
The Image Data Resource: A Bioimage Data Integration and Publication Platform.
cell-imaging · DOI 10.1038/nmeth.4326 · Nature Methods · 336 citations
imagingdatabase
Jun 2017