Models / rna-ml / rinalmo-micro / benchmarks

rna-ml/rinalmo-micro

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Protein abundance from coding sequence (E. coli) rna-ml/coding-sequence-protein-abundance

atlas-n100-v1

Metric	Value	95% CI	n	Rank	Best in catalogue	Source	Overlap	Board
Spearman ρ (zero-shot pseudo-log-likelihood) ↑ higher is better · zero-shot	0.160	[−0.057, 0.364]	100	9 / 11	0.552	reproduced	none declared	Board
Spearman ρ (ridge probe) ↑ higher is better · probe	0.565	[0.402, 0.694]	100	6 / 11	0.688	reproduced	none declared	Board
RMSE (ridge probe) ↓ lower is better · log10 ppm · probe	1.083	[0.940, 1.226]	100	6 / 11	0.973	reproduced	none declared	Board
Pearson r (ridge probe) ↑ higher is better · probe · secondary	0.547	[0.401, 0.676]	100	—	0.665	reproduced	none declared	Board
R² (ridge probe) ↑ higher is better · probe · secondary	0.270	[0.072, 0.418]	100	—	0.411	reproduced	none declared	Board

RNA secondary structure (F1) rna-ml/rna-secondary-structure-f1

Drawn from: rna-secondary-structure-prediction

atlas-n100-v2

Metric	Value	95% CI	n	Rank	Best in catalogue	Source	Overlap	Board
Base-pair F1 (2-D pair head) ↑ higher is better · probe	0.545	[0.488, 0.602]	100	4 / 4	0.585	reproduced	overlap Train/test overlap declared by the evaluator: rna-ml/rnacentral	Board
Base-pair precision (2-D pair head) ↑ higher is better · probe · secondary	0.531	[0.477, 0.588]	100	—	0.591	reproduced	overlap Train/test overlap declared by the evaluator: rna-ml/rnacentral	Board
Base-pair recall (2-D pair head) ↑ higher is better · probe · secondary	0.604	[0.542, 0.665]	100	—	0.633	reproduced	overlap Train/test overlap declared by the evaluator: rna-ml/rnacentral	Board
Base-pair MCC (2-D pair head) ↑ higher is better · probe · secondary	0.553	[0.496, 0.610]	100	—	0.592	reproduced	overlap Train/test overlap declared by the evaluator: rna-ml/rnacentral	Board