Models / rna-ml / rinalmo-giga / benchmarks

rna-ml/rinalmo-giga

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rna-secondary-structure-prediction rna-ml/rna-secondary-structure-prediction

RNA secondary structure (F1) rna-ml/rna-secondary-structure-f1

Drawn from: rna-secondary-structure-prediction

atlas-n100-v2

Metric	Value	95% CI	n	Rank	Best in catalogue	Source	Overlap	Board
Base-pair F1 (2-D pair head) ↑ higher is better · probe	0.584	[0.527, 0.643]	100	2 / 4	0.585	reproduced	overlap Train/test overlap declared by the evaluator: rna-ml/rnacentral	Board
Base-pair precision (2-D pair head) ↑ higher is better · probe · secondary	0.569	[0.513, 0.626]	100	—	0.591	reproduced	overlap Train/test overlap declared by the evaluator: rna-ml/rnacentral	Board
Base-pair recall (2-D pair head) ↑ higher is better · probe · secondary	0.631	[0.567, 0.696]	100	—	0.633	reproduced	overlap Train/test overlap declared by the evaluator: rna-ml/rnacentral	Board
Base-pair MCC (2-D pair head) ↑ higher is better · probe · secondary	0.590	[0.533, 0.649]	100	—	0.592	reproduced	overlap Train/test overlap declared by the evaluator: rna-ml/rnacentral	Board

Other Benchmarks drawn from no hub dataset you can see

Protein abundance from coding sequence (E. coli) rna-ml/coding-sequence-protein-abundance

atlas-n100-v1

Metric	Value	95% CI	n	Rank	Best in catalogue	Source	Overlap	Board
Spearman ρ (zero-shot pseudo-log-likelihood) ↑ higher is better · zero-shot	0.207	[−0.003, 0.404]	100	6 / 11	0.552	reproduced	none declared	Board
Spearman ρ (ridge probe) ↑ higher is better · probe	0.631	[0.482, 0.752]	100	3 / 11	0.688	reproduced	none declared	Board
RMSE (ridge probe) ↓ lower is better · log10 ppm · probe	1.007	[0.859, 1.157]	100	3 / 11	0.973	reproduced	none declared	Board
Pearson r (ridge probe) ↑ higher is better · probe · secondary	0.618	[0.466, 0.736]	100	—	0.665	reproduced	none declared	Board
R² (ridge probe) ↑ higher is better · probe · secondary	0.368	[0.171, 0.516]	100	—	0.411	reproduced	none declared	Board