Models
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Chai-1 is a multi-modal foundation model for molecular structure prediction that performs at the state-of-the-art across a variety of benchmarks.
Boltz-1 is an open-source model which predicts the 3D structure of proteins, rna, dna and small molecules; it handles modified residues, covalent ligands and…
Mirror of the base ProGen2-base model (with slightly modified configuration and forward pass) by Nijkamp, et
Mirror of the base ProGen2-small model (with slightly modified configuration and forward pass) by Nijkamp, et
AMPLIFY is an efficient, state-of-the-art protein language model pre-trained using masked language modeling on UniRef100, OAS, and SCOP (UR100P).
AMPLIFY is an efficient, state-of-the-art protein language model pre-trained using masked language modeling on UniRef100, OAS, and SCOP (UR100P).
An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO).