Models
This model was previously named "PubMedBERT (abstracts + full text)".
This is the pretrained model presented in SciBERT: A Pretrained Language Model for Scientific Text, which is a BERT model trained on scientific
fill-mask artifact mirrored from the HuggingFace Hub.
The Publicly Available Clinical BERT Embeddings paper contains four unique clinicalBERT models: initialized with BERT-Base (casedL-12H-768A-12) or BioBERT…
Pre-trained language models have attracted increasing attention in the biomedical domain, inspired by their great success in the general natural language…
Note: This model was previously known as PubMedGPT 2.7B, but we have changed it due to a request from the NIH which holds the trademark for
CXR-BERT is a chest X-ray (CXR) domain-specific language model that makes use of an improved vocabulary, novel pretraining procedure, weight regularization,…
ESM-2 is a state-of-the-art protein model trained on a masked language modelling objective.
ESM-2 is a state-of-the-art protein model trained on a masked language modelling objective.
ESM-2 is a state-of-the-art protein model trained on a masked language modelling objective.
Pretrained model on protein sequences using a masked language modeling (MLM) objective.
ChemBERTa: Training a BERT-like transformer model for masked language modelling of chemical SMILES
About the Model An English Named Entity Recognition model, trained on Maccrobat to recognize the bio-medical entities (107 entities) from a given text corpus…
text-generation artifact mirrored from the HuggingFace Hub.
Model description - Intended uses and limitations - How to use - Training - Evaluation - Additional information - Author - Licensing information - Citation…
A Named Entity Recognition model for clinical entities (problem, treatment,
This model card describes the ClinicalBERT model, which was trained on a large multicenter dataset with a large corpus of 1.2B words of diverse diseases we…
The Clinical Assertion and Negation Classification BERT is introduced in the paper Assertion Detection in Clinical Notes: Medical Language Models to the…
SapBERT-PubMedBERT SapBERT by Liu et al.
This is a PubMedBERT-base model fined-tuned using sentence-transformers.
BiomedCLIP is a biomedical vision-language foundation model that is pretrained on PMC-15M, a dataset of 15 million figure-caption pairs extracted from…
This is a sentence-transformers model: It maps sentences & paragraphs to a 768 dimensional dense vector space and can be used for tasks like clustering or…
An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO).
ESM Protein Localization Model Model description The ESM Protein Localization Model is a deep learning model trained on protein sequences to predict their…
An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO).
This repository contains 356 Pfam-level protein language model checkpoints generated for the study “Does domain-specific unsupervised fine-tuning improve…
This repository contains 254 Pfam-level protein language model checkpoints generated for the study “Does domain-specific unsupervised fine-tuning improve…
This repository contains 171 Clan-level protein language model checkpoints generated for the study “Does domain-specific unsupervised fine-tuning improve…
This repository contains 82 Clan-level protein language model checkpoints generated for the study “Does domain-specific unsupervised fine-tuning improve…
Model Card for ChemBERTa-10M-MTR Model Details Model Description More information needed - Developed by: DeepChem - Shared by [Optional]:
This repository contains a fine-tuned Vision Transformer (ViT) model for classifying chest X-ray images, utilizing the CheXpert dataset.
Model description - Intended uses and limitations - How to use - Limitations and bias - Training - Tokenization and model pretraining - Training corpora and…
An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO).
ESM-2 is a state-of-the-art protein model trained on a masked language modelling objective.
ESM-2 is a state-of-the-art protein model trained on a masked language modelling objective.
ESM-2 is a state-of-the-art protein model trained on a masked language modelling objective.
Pretrained model on protein sequences using a masked language modeling (MLM) objective.
An encoder-only, half-precision version of the ProtT5-XL-UniRef50 model.
This set of model weights was released with the GitHub-compatible esm package format.
esm3-sm-open-v1 is trained on 2.78 billion natural proteins.
ESMFold is a state-of-the-art end-to-end protein folding model based on an ESM-2 backbone.
The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes.
The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes.
The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes.
This is the official pre-trained model introduced in DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species
Geneformer Geneformer is a foundational transformer model pretrained on a large-scale corpus of human single cell transcriptomes to enable context-aware…
Source code repository mirrored from GitHub (bowang-lab/scGPT).