Datasets / bio-nlp / bc5cdr / benchmarks

bio-nlp/bc5cdr

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1 benchmark · 54 results. Each benchmark shows the top of its default board (its first primary metric at its default version); ranks are the server's, ties share a rank, and "best" is the best visible result, not a state of the art.

BC5CDR chemical NER bio-nlp/bc5cdr-chemical-ner

Chemical entity F1 (token probe) · ↑ higher is better · probe · atlas-n100-v1

# Model Value [95% CI] Source Overlap
1 bio-nlp/biomedvlp-cxr-bert-specialized 0.889 [0.857, 0.921] best reproduced
overlap

Train/test overlap declared by the evaluator: PubMed abstracts

2 bio-nlp/biobert-base-cased-v1-2 0.878 [0.845, 0.912] reproduced
overlap

Train/test overlap declared by the evaluator: PubMed abstracts

3 bio-nlp/biomednlp-biomedbert-base-uncased-abstract-fulltext 0.878 [0.841, 0.912] reproduced
overlap

Train/test overlap declared by the evaluator: PubMed abstracts

4 bio-nlp/scibert-scivocab-uncased 0.874 [0.833, 0.908] reproduced unknown
5 bio-nlp/clinical-assertion-negation-bert 0.863 [0.823, 0.897] reproduced
overlap

Train/test overlap declared by the evaluator: PubMed abstracts

5 of 16 on this board. Full leaderboard